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MSMExplorer: A Visualization Application for Markov State Models for Folding

eagle-i ID


Resource Type

  1. Software


  1. Resource Description
    A java-based visualization application for Markov State Models for folding simulations. The programs is designed as a gui interface for viewing and interacting with MSMs constructed by MSMBuilder. SOURCE CODE NOTICE: for up-to-date source code access please visit: http://github.com/brycecr/msmexplorer Similarly, Up-to-date distributions can be downloaded from https://github.com/brycecr/msmexplorer/downloads but periodic major releases (considered "stable") will still be uploaded to simtk. In the Documents section of this site, you'll find an illustrated Reference and Tutorial PDF and a short tutorial video. Keywords: Folding, GUI, Markov state model, Phase space, protein folding, Visualization
  2. Contact
    Cronkite-Ratcliff, Bryce
  3. Used by
    Stanford University
  4. Operating System
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Copyright © 2016 by the President and Fellows of Harvard College
The eagle-i Consortium is supported by NIH Grant #5U24RR029825-02 / Copyright 2016