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Integrated Flux Balance Analysis Model of Escherichia coli

eagle-i ID

http://shared.eagle-i.net/i/0000013a-4ad3-8e03-5291-c33f80000000

Resource Type

  1. Software

Properties

  1. Resource Description
    This project includes several MATLAB scripts that simulate E. coli central metabolism and the effects of single gene deletions on metabolism using 3 approaches -- iFBA, rFBA, and ODE. The project also includes several MATLAB scripts that simulate biochemical networks using 1) integrated flux balance analysis (iFBA) -- a combined FBA, boolean regulatory, and ODE approach; 2) regulatory flux balance analysis (rFBA); and 3) ordinary differential equations (ODE). Additionally, the project includes several MATLAB and php scripts for visualizing metabolic simulations. Keywords: central carbon metabolism, computational model, diauxic growth, Escherichia coli, flux-balance analysis, growth model, systems biology
  2. Contact
    Karr, Jonathan, Ph.D.
  3. Contact
    Covert, Markus
  4. Contact
    Xiao, Nan
  5. Contact
    Chen, Tiffany
  6. Used by
    Stanford University
  7. Operating System
    Any
  8. Coded in
    MATLAB language
 
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Provenance Metadata About This Resource Record

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The eagle-i Consortium is supported by NIH Grant #5U24RR029825-02 / Copyright 2016