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Integrated Flux Balance Analysis Model of Escherichia coli
eagle-i ID
http://shared.eagle-i.net/i/0000013a-4ad3-8e03-5291-c33f80000000
Resource Type
Properties
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Resource Description
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This project includes several MATLAB scripts that simulate E. coli central metabolism and the effects of single gene deletions on metabolism using 3 approaches -- iFBA, rFBA, and ODE. The project also includes several MATLAB scripts that simulate biochemical networks using 1) integrated flux balance analysis (iFBA) -- a combined FBA, boolean regulatory, and ODE approach; 2) regulatory flux balance analysis (rFBA); and 3) ordinary differential equations (ODE). Additionally, the project includes several MATLAB and php scripts for visualizing metabolic simulations.
Keywords: central carbon metabolism, computational model, diauxic growth, Escherichia coli, flux-balance analysis, growth model, systems biology
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Contact
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Karr, Jonathan, Ph.D.
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Contact
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Covert, Markus
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Contact
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Xiao, Nan
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Contact
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Chen, Tiffany
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Used by
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Stanford University
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Operating System
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Any
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Coded in
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MATLAB language
