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String kernel package

eagle-i ID


Resource Type

  1. Software


  1. Resource Description
    "The string kernel package contains implementations for the mismatch and profile string kernels for use with support vector machine (SVM) classifiers for protein sequence classification. Both kernels compute similarity between protein sequences based on common occurrences of k-length subsequences (k-mers) counted with substitutions. Kernel functions for protein sequence data enable the training of SVMs for a range of prediction problems, in particular protein structural class prediction and remote homology detection. A version of the Spider MATLAB machine learning package is also bundled with the code, which allows users to train SVMs and evaluate performance on test sets with the packaged software." Development stage: Stable public release Release date: September 2004
  2. Contact
    Leslie, Christina
  3. Used by
    Center for Multiscale Analysis of Genomic and Cellular Networks
  4. Version
  5. Software license
    Open source software license
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